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Figure 6: Each Point Represents a Set of Protein Sites With Similar Hydrophobicity in the Evolutionary Model.
doi 10.7717/peerj.5549/fig-6
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Figure 4: In This Plot Each Point Represents a Group of Proteins With Similar Mean Hydrophobicity in the Evolutionary Model, and Each Curve Is Obtained by Varying the Global Mutational Distribution and Exchangeability Matrix, Which Represent the Mutation Process.
Figure 3: Each Point Represents the Substitution Rate Versus the Sequence Entropy for All Sites of the Ribonuclease Protein With PDB Code 1pyl, Which Is Representative of Our Data Set and Makes the Figure Easier to Interpret Because of Its Small Number of Sites.
Supplemental Information 4: List of the 258 Clusters Produced in the Study and the Set of Grouped Genes in Each Cluster. Each Line Represents a Different Cluster of Genes
Figure 1: The Model Set.
Figure 4: Mean Evolutionary Conservation of Each Module of TLR15.
Figure 1: The Proportion of Larvae Reacting With the Four Behaviours at Each Time Point.
Figure 6: Simple Evolutionary Pattern of Mulberry.
Figure S4: Site-Specific Substitution Rate Versus Sequence Entropy for All Sites of 9 Proteins. The Selection Model Is WT, the Mutation Model Is Codon-Based, With Parameters Separately Optimized for Each Protein
Figure 6: Dendrogram (Cluster Analysis) of the Sites in the Barycz River.
