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Publications by ASAKO KOIKE

Localized Suffix Array and Its Application to Genome Mapping Problems for Paired-End Short Reads

2009English

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HI: Haplotype Improver Using Paired-End Short Reads

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NucBreak: Location of Structural Errors in a Genome Assembly by Using Paired-End Illumina Reads

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Using Paired-End Sequences to Optimise Parameters for Alignment of Sequence Reads Against Related Genomes

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FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

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An Enrichment Method for Mapping Ambiguous Reads to Reference Genome for NGS Analysis

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Improving Draft Assemblies by Iterative Mapping and Assembly of Short Reads to Eliminate Gaps

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ALLPATHS 2: Small Genomes Assembled Accurately and With High Continuity From Short Paired Reads

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Unicycler: Resolving Bacterial Genome Assemblies From Short and Long Sequencing Reads

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De Novo Fragment Assembly With Short Mate-Paired Reads: Does the Read Length Matter?

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