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Publications by Bouke A. de Boer
OccuPeak: ChIP-Seq Peak Calling Based on Internal Background Modelling
PLoS ONE
Multidisciplinary
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PeakRanger: A Cloud-Enabled Peak Caller for ChIP-seq Data
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ChIP-Chip: Algorithms for Calling Binding Sites
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Information Systems Modelling Based on Graph-Theoretic Background
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Systematic Evaluation of the Impact of ChIP-seq Read Designs on Genome Coverage, Peak Identification, and Allele-Specific Binding Detection
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Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data
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PeakPass: Automating ChIP-Seq Blacklist Creation
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SeqAcademy: An Educational Pipeline for RNA-Seq and ChIP-Seq Analysis
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Command Line Analysis of ChIP-seq Results
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Comparative Studies of Differential Gene Calling Using RNA-Seq Data
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