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Publications by Daniel M. Zuckerman
EmrE Reminds Us to Expect the Unexpected in Membrane Transport
Journal of General Physiology
Physiology
Accelerating Molecular Monte Carlo Simulations Using Distance and Orientation Dependent Energy Tables: Tuning From Atomistic Accuracy to Smoothed “Coarse-Grained” Models
Biophysical Journal
Biophysics
Weighted Ensemble of Pathways for Ligand Unbinding From T4 Lysozyme
Biophysical Journal
Biophysics
Exploring Optimal Resource Allocation for Weighted Ensemble Resampling of Rare Events
Biophysical Journal
Biophysics
Error Analysis for Small-Sample, High-Variance Data: Cautions for Bootstrapping and Bayesian Bootstrapping
Biophysical Journal
Biophysics
Biophysical Comparison of ATP Synthesis Mechanisms Shows a Kinetic Advantage for the Rotary Process
Biophysical Journal
Biophysics
Should Virus Capsids Assemble Perfectly? A Simple Equilibrium Model for Defects
Biophysical Journal
Biophysics
What Is Your Machine Really Doing? Systematic Exploration of Alternative Mechanisms as Applied to Transport
Biophysical Journal
Biophysics
WESTPA: An Interoperable, Highly Scalable Software Package for Weighted Ensemble Simulation and Analysis
Journal of Chemical Theory and Computation
Theoretical Chemistry
Computer Science Applications
Physical
Extending Fragment-Based Free Energy Calculations With Library Monte Carlo Simulation: Annealing in Interaction Space
Journal of Computational Chemistry
Computational Mathematics
Chemistry
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