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Publications by Daniel M. Zuckerman

Rapid Sampling of All-Atom Peptides Using a Library-Based Polymer-Growth Approach

Journal of Computational Chemistry

Computational Mathematics

English

Best Practices for Foundations in Molecular Simulations [Article V1.0]

Living Journal of Computational Molecular Science

English

Ensemble-Based Convergence Analysis of Biomolecular Trajectories

Biophysical Journal

English

A Second Look at Canonical Sampling of Biomolecules Using Replica Exchange Simulation

Journal of Chemical Theory and Computation

Theoretical Chemistry

Computer Science Applications

English

Resampling Improves the Efficiency of a “Fast-Switch” Equilibrium Sampling Protocol

Journal of Chemical Physics

Theoretical Chemistry

English

Chapter 2 Quantifying Uncertainty and Sampling Quality in Biomolecular Simulations

Annual Reports in Computational Chemistry

Computational Mathematics

English