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Publications by Dhananjay C. Joshi
Multiple-Walker Curvilinear-Path Umbrella Sampling Simulations: To Trace Protein-Protein Dissociation Trajectories and Compute Potential of Mean Force
Biophysical Journal
Biophysics
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Analysis of the Statistical Error in Umbrella Sampling Simulations by Umbrella Integration
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Calculation of Protein-Protein Binding Free Energies Using Umbrella Sampling With Dual Resolution Water Models
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Non-Equilibrium Umbrella Sampling Applied to Force Spectroscopy of Soft Matter
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Osmotic Pressure Simulations of Amino Acids and Peptides Highlight Potential Routes to Protein Force Field Parameterization
Fast Calculation of Protein-Protein Binding Free Energies Using Umbrella Sampling With a Coarse-Grained Model
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Efficient Determination of Free Energy Landscapes in Multiple Dimensions From Biased Umbrella Sampling Simulations Using Linear Regression
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Sampling Protein Form and Function With the Atomic Force Microscope
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A Three‐dimensional Potential of Mean Force to Improve Backbone and Sidechain Hydrogen Bond Geometry in Xplor‐NIH Protein Structure Determination
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Dissociation of a Dynamic Protein Complex Studied by All-Atom Molecular Simulations
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