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Publications by Erik van Nimwegen

Crunch: Integrated Processing and Modeling of ChIP-seq Data in Terms of Regulatory Motifs

Genome Research
Genetics
2019English

Nucleosome Free Regions in Yeast Promoters Result From Competitive Binding of Transcription Factors That Interact With Chromatin Modifiers

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (Mapk8)

PLoS ONE
Multidisciplinary
2013English

Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters

PLoS ONE
Multidisciplinary
2011English

Bayesian Inference of the Gene Expression States of Single Cells From scRNA-seq Data

2019English

Finding Regulatory Elements and Regulatory Motifs: A General Probabilistic Framework

BMC Bioinformatics
BiochemistryApplied MathematicsComputer Science ApplicationsStructural BiologyMolecular Biology
2007English

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