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Publications by John D Chodera

Markov State Models of Biomolecular Conformational Dynamics

Current Opinion in Structural Biology

Structural Biology

Molecular Biology

English

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Optimal Use of Data in Parallel Tempering Simulations for the Construction of Discrete-State Markov Models of Biomolecular Dynamics

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Optimal Control of Molecular Dynamics Using Markov State Models

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Enumerating Viable N-State Markov Models of Sodium Channel Dynamics

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Understanding the Conformational Dynamics of a Pentameric Ligand-Gated Ion Channel Through Markov State Modeling

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45 Exploring Conformational Dynamics of Biomolecular Recognition via Hierarchical Sampling Approach

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Analyzing Conformational Dynamics of Single P-Glycoprotein Transporters by Förster Resonance Energy Transfer Using Hidden Markov Models

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Mixed-Frequency VAR Models With Markov-Switching Dynamics

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Building Markov State Models Using Optimal Transport Theory

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