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Publications by Jos de Graaf

HLA Typing From RNA-Seq Sequence Reads

Genome Medicine
Molecular MedicineGeneticsMolecular Biology
2012English

Immunomic, Genomic and Transcriptomic Characterization of CT26 Colorectal Carcinoma

BMC Genomics
BiotechnologyGenetics
2014English

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Trimming of Sequence Reads Alters RNA-Seq Gene Expression Estimates

BMC Bioinformatics
BiochemistryApplied MathematicsComputer Science ApplicationsStructural BiologyMolecular Biology
2016English

From RNA-seq Reads to Differential Expression Results

Genome Biology
2010English

Effect of RNA Integrity on Uniquely Mapped Reads in RNA-Seq

BMC Research Notes
BiochemistryMedicineGeneticsMolecular Biology
2014English

High-Sensitivity HLA Typing by Saturated Tiling Capture Sequencing (STC-Seq)

BMC Genomics
BiotechnologyGenetics
2018English

Preimplantation HLA Typing

2011English

An Optimized Protocol for Generation and Analysis of Ion Proton Sequencing Reads for RNA-Seq

BMC Genomics
BiotechnologyGenetics
2016English

RNA Velocity: Molecular Kinetics From Single-Cell RNA-Seq

Molecular Cell
Cell BiologyMolecular Biology
2018English

A Transposable Approach to RNA-seq From Total RNA

Nature Methods
BiochemistryBiotechnologyCell BiologyMolecular Biology
2012English

From Reads to Genes to Pathways: Differential Expression Analysis of RNA-Seq Experiments Using Rsubread and the edgeR Quasi-Likelihood Pipeline

F1000Research
GeneticsMolecular BiologyPharmacologyBiochemistryMicrobiology ImmunologyMedicineToxicologyPharmaceutics
2016English

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