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Publications by Mark A. Ragan

Symbiodinium Genomes Reveal Adaptive Evolution of Functions Related to Coral-Dinoflagellate Symbiosis

Communications Biology
GeneticsMolecular BiologyBiochemistryBiological SciencesMedicineAgricultural
2018English

Inferring Phylogenies of Evolving Sequences Without Multiple Sequence Alignment

Scientific Reports
Multidisciplinary
2014English

Recapitulating Phylogenies Using K-Mers: From Trees to Networks

F1000Research
GeneticsMolecular BiologyPharmacologyBiochemistryMicrobiology ImmunologyMedicineToxicologyPharmaceutics
2016English

Alignment-Free Microbial Phylogenomics Under Scenarios of Sequence Divergence, Genome Rearrangement and Lateral Genetic Transfer

Scientific Reports
Multidisciplinary
2016English

Signatures of Adaptation and Symbiosis in Genomes and Transcriptomes of Symbiodinium

Scientific Reports
Multidisciplinary
2017English

Dynamics of Genome Rearrangement in Bacterial Populations

PLoS Genetics
EvolutionEcologyGeneticsMolecular BiologyCancer ResearchSystematicsBehavior
2008English

Are Protein Domains Modules of Lateral Genetic Transfer?

PLoS ONE
Multidisciplinary
2009English

Prototheca Richardsi, a Pathogen of Anuran Larvae, Is Related to a Clade of Protistan Parasites Near the Animal-Fungal Divergence

Microbiology
Microbiology
1999English

Large-Scale Detection of Recombination in Nucleotide Sequences

AIP Conference Proceedings
AstronomyPhysics
2008English

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