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Publications by Nelson Johansen

scAlign: A Tool for Alignment, Integration, and Rare Cell Identification From scRNA-seq Data

Genome Biology
2019English

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Revealing Cell Fate Decisions During Reprogramming by scRNA-seq

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Bayesian Inference of the Gene Expression States of Single Cells From scRNA-seq Data

2019English

Digitaldlsorter: Deep-Learning on scRNA-Seq to Deconvolute Gene Expression Data

Frontiers in Genetics
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2019English

iREAD: A Tool for Intron Retention Detection From RNA-seq Data

2017English

Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment

G3: Genes, Genomes, Genetics
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900 Single Cell RNA Seq (scRNA-seq) Defines Early and Late Epithelial Transit Amplifying (TA) Cells

Journal of Investigative Dermatology
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2019English

Alignment of Time-Course Single-Cell RNA-seq Data With CAPITAL

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Alt Event Finder: A Tool for Extracting Alternative Splicing Events From RNA-seq Data

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2012English

A Hybrid Clustering Algorithm for Identifying Cell Types From Single-Cell RNA-Seq Data

Genes
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