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Publications by Pengyu Ren

Statistical Potentials for Hairpin and Internal Loops Improve the Accuracy of the Predicted RNA Structure

Journal of Molecular Biology
Structural BiologyMolecular BiologyBiophysics
2011English

Biomolecular Electrostatics and Solvation: A Computational Perspective

Quarterly Reviews of Biophysics
Biophysics
2012English

Using Docking and Alchemical Free Energy Approach to Determine the Binding Mechanism of eEF2K Inhibitors and Prioritizing the Compound Synthesis

Frontiers in Molecular Biosciences
BiochemistryGeneticsMolecular Biology
2015English

Capturing RNA Folding Free Energy With Coarse-Grained Molecular Dynamics Simulations

Scientific Reports
Multidisciplinary
2017English

An Optimized Charge Penetration Model for Use With the AMOEBA Force Field

Physical Chemistry Chemical Physics
Theoretical ChemistryAstronomyPhysicsPhysical
2017English

Understanding the Specificity of a Docking Interaction Between JNK1 and the Scaffolding Protein JIP1

Journal of Physical Chemistry B
SurfacesTheoretical ChemistryMaterials ChemistryFilmsMedicineCoatingsPhysical
2011English

Systematic Improvement of a Classical Molecular Model of Water

Journal of Physical Chemistry B
SurfacesTheoretical ChemistryMaterials ChemistryFilmsMedicineCoatingsPhysical
2013English

Reconciling NMR Structures of the HIV-1 Nucleocapsid Protein (NCp7) Using Extensive Polarizable Force Field Free-Energy Simulations

2019English

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