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Publications by Ryan L. Hayes

Ligand Modulates Cross-Coupling Between Riboswitch Folding and Transcriptional Pausing

Molecular Cell
Cell BiologyMolecular Biology
2018English

Generalized Manning Condensation Model Captures the RNA Ion Atmosphere

Physical Review Letters
AstronomyPhysics
2015English

A Magnesium-Induced Triplex Pre-Organizes the SAM-II Riboswitch

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2017English

SMOG 2: A Versatile Software Package for Generating Structure-Based Models

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2016English

Approaching Protein Design With Multisite Λ Dynamics: Accurate and Scalable Mutational Folding Free Energies in T4 Lysozyme

Protein Science
BiochemistryMedicineMolecular Biology
2018English

Adaptive Landscape Flattening Accelerates Sampling of Alchemical Space in Multisite Λ Dynamics

Journal of Physical Chemistry B
SurfacesTheoretical ChemistryMaterials ChemistryFilmsMedicineCoatingsPhysical
2017English

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