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Publications by Sam Younkin

Systematic Evaluation of the Impact of ChIP-seq Read Designs on Genome Coverage, Peak Identification, and Allele-Specific Binding Detection

BMC Bioinformatics

Applied Mathematics

Computer Science Applications

Structural Biology

Molecular Biology

English

Related publications

Comparative Analysis of ChIP-exo Peak-Callers: Impact of Data Quality, Read Duplication and Binding Subtypes

BMC Bioinformatics

Applied Mathematics

Computer Science Applications

Structural Biology

Molecular Biology

English

Saturation Analysis of ChIP-seq Data for Reproducible Identification of Binding Peaks

Genome Research

English

OccuPeak: ChIP-Seq Peak Calling Based on Internal Background Modelling

Multidisciplinary

English

T-Kde: A Method for Genome-Wide Identification of Constitutive Protein Binding Sites From Multiple ChIP-seq Data Sets

English

Long-Read Assembly of the Chinese Rhesus Macaque Genome and Identification of Ape-Specific Structural Variants

Nature Communications

Molecular Biology

English

PeakRanger: A Cloud-Enabled Peak Caller for ChIP-seq Data

BMC Bioinformatics

Applied Mathematics

Computer Science Applications

Structural Biology

Molecular Biology

English

Evaluation of the Coverage and Depth of Transcriptome by RNA-Seq in Chickens

BMC Bioinformatics

Applied Mathematics

Computer Science Applications

Structural Biology

Molecular Biology

English

Genome-Wide Localization of Protein-Dna Binding and Histone Modification by a Bayesian Change-Point Method With ChIP-seq Data

PLoS Computational Biology

Molecular Neuroscience

Molecular Biology

Computational Theory

English

The Impact of Library Preparation Protocols on the Consistency of Allele Frequency Estimates in Pool-Seq Data

Molecular Ecology Resources

English