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Publications by Stephen Andrew Semick

SeqAcademy: An Educational Pipeline for RNA-Seq and ChIP-Seq Analysis

F1000Research
GeneticsMolecular BiologyPharmacologyBiochemistryMicrobiology ImmunologyMedicineToxicologyPharmaceutics
2018English

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Giardia Lamblia Transcriptome Analysis Using TSS-Seq and RNA-Seq

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RSEQREP: RNA-Seq Reports, an Open-Source Cloud-Enabled Framework for Reproducible RNA-Seq Data Processing, Analysis, and Result Reporting

F1000Research
GeneticsMolecular BiologyPharmacologyBiochemistryMicrobiology ImmunologyMedicineToxicologyPharmaceutics
2017English

Figure 1: Pipeline Used to Detect RNA-seq Variants.

English

RASflow: An RNA-Seq Analysis Workflow With Snakemake

BMC Bioinformatics
BiochemistryApplied MathematicsComputer Science ApplicationsStructural BiologyMolecular Biology
2020English

A Computational Pipeline for Cross-Species Analysis of RNA-seq Data Using R and Bioconductor

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BiochemistryComputational MathematicsApplied MathematicsComputer Science ApplicationsMolecular Biology
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Command Line Analysis of ChIP-seq Results

EMBnet.journal
2011English

bcbioRNASeq: R Package for Bcbio RNA-seq Analysis

F1000Research
GeneticsMolecular BiologyPharmacologyBiochemistryMicrobiology ImmunologyMedicineToxicologyPharmaceutics
2017English

Editorial: RNA-Seq Analysis: Methods, Applications and Challenges

Frontiers in Genetics
GeneticsMolecular Medicine
2020English

Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data

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Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

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