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Publications by Trey Ideker

Modeling Transcriptome Dynamics in a Complex World

Cell
BiochemistryGeneticsMolecular Biology
2012English

A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma

Cell
BiochemistryGeneticsMolecular Biology
2019English

Combinatorial CRISPR–Cas9 Screens for De Novo Mapping of Genetic Interactions

Nature Methods
BiochemistryBiotechnologyCell BiologyMolecular Biology
2017English

Phosphorylation of LC3 by the Hippo Kinases STK3/STK4 Is Essential for Autophagy

Molecular Cell
Cell BiologyMolecular Biology
2015English

Translation of Genotype to Phenotype by a Hierarchy of Cell Subsystems

Cell Systems
Forensic MedicinePathologyCell BiologyHistology
2016English

De Novo Emergence of Adaptive Membrane Proteins From Thymine-Rich Genomic Sequences

Nature Communications
AstronomyGeneticsMolecular BiologyBiochemistryChemistryPhysics
2020English

Typing Tumors Using Pathways Selected by Somatic Evolution

Nature Communications
AstronomyGeneticsMolecular BiologyBiochemistryChemistryPhysics
2018English

Protein Networks as Logic Functions in Development and Cancer

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2011English

Integrated Proteomic and Genomic Analysis of Gastric Cancer Patient Tissues

Journal of Proteome Research
BiochemistryChemistry
2015English

A Multi-Tool Recipe to Identify Regions of Protein-Dna Binding and Their Influence on Associated Gene Expression

F1000Research
GeneticsMolecular BiologyPharmacologyBiochemistryMicrobiology ImmunologyMedicineToxicologyPharmaceutics
2017English

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