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Publications by Vassily Hatzimanikatis

Enzyme Annotation for Orphan and Novel Reactions Using Knowledge of Substrate Reactive Sites

Proceedings of the National Academy of Sciences of the United States of America

Multidisciplinary

English

Metabolic Needs and Capabilities of Toxoplasma Gondii Through Combined Computational and Experimental Analysis

PLoS Computational Biology

Molecular Neuroscience

Molecular Biology

Computational Theory

English

Uncertainty Reduction in Biochemical Kinetic Models: Enforcing Desired Model Properties

PLoS Computational Biology

Molecular Neuroscience

Molecular Biology

Computational Theory

English

lumpGEM: Systematic Generation of Subnetworks and Elementally Balanced Lumped Reactions for the Biosynthesis of Target Metabolites

PLoS Computational Biology

Molecular Neuroscience

Molecular Biology

Computational Theory

English

Particle-Based Simulation Reveals Macromolecular Crowding Effects on the Michaelis-Menten Mechanism

Biophysical Journal

English

Analysis of Translation Elongation Dynamics in the Context of an Escherichia Coli Cell

Biophysical Journal

English

Large-Scale Kinetic Metabolic Models of Pseudomonas Putida KT2440 for Consistent Design of Metabolic Engineering Strategies

Biotechnology for Biofuels

Applied Microbiology

Renewable Energy

the Environment

English

An Algorithmic Framework for Genome-Wide Modeling and Analysis of Translation Networks

Biophysical Journal

English