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Publications by Volkan Atalay

A Signal Transduction Score Flow Algorithm for Cyclic Cellular Pathway Analysis, Which Combines Transcriptome and ChIP-seq Data

Molecular BioSystems
BiotechnologyMolecular Biology
2012English

The CAFA Challenge Reports Improved Protein Function Prediction and New Functional Annotations for Hundreds of Genes Through Experimental Screens

Genome Biology
2019English

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Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data

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2013English

WNT Signal Transduction Pathway and Apoptosis: A Review

Cancer Cell International
Cancer ResearchOncologyGenetics
2010English

Mechanisms of Cellular Signal Transduction

International Journal of Biological Sciences
Applied MicrobiologyEvolutionEcologyDevelopmental BiologyCell BiologyMolecular BiologySystematicsBehaviorBiotechnology
2005English

Large-Scale Quality Analysis of Published ChIP-seq Data

G3: Genes, Genomes, Genetics
MedicineGeneticsMolecular Biology
2013English

SeqAcademy: An Educational Pipeline for RNA-Seq and ChIP-Seq Analysis

F1000Research
GeneticsMolecular BiologyPharmacologyBiochemistryMicrobiology ImmunologyMedicineToxicologyPharmaceutics
2018English

Sensitivity Analysis and Robust Experimental Design of a Signal Transduction Pathway System

International Journal of Chemical Kinetics
BiochemistryInorganic ChemistryTheoretical ChemistryOrganic ChemistryPhysical
2008English

Saturation Analysis of ChIP-seq Data for Reproducible Identification of Binding Peaks

Genome Research
Genetics
2015English

Network-Based Isoform Quantification With RNA-Seq Data for Cancer Transcriptome Analysis

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2015English

PeakRanger: A Cloud-Enabled Peak Caller for ChIP-seq Data

BMC Bioinformatics
BiochemistryApplied MathematicsComputer Science ApplicationsStructural BiologyMolecular Biology
2011English

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