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Publications in Ecology

Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2011English

Impact of Fast Sodium Channel Inactivation on Spike Threshold Dynamics and Synaptic Integration

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2011English

Complex Dynamics of Virus Spread From Low Infection Multiplicities: Implications for the Spread of Oncolytic Viruses

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2017English

ChromoTrace: Computational Reconstruction of 3D Chromosome Configurations for Super-Resolution Microscopy

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2018English

Integrating Flux Balance Analysis Into Kinetic Models to Decipher the Dynamic Metabolism of Shewanella Oneidensis MR-1

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2012English

Red Blood Cells Stabilize Flow in Brain Microvascular Networks

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2019English

A First Attempt to Bring Computational Biology Into Advanced High School Biology Classrooms

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2011English

The Landscape Genetics of Infectious Disease Emergence and Spread

Molecular Ecology
GeneticsEvolutionEcologySystematicsBehavior
2010English

Improved Estimation and Interpretation of Correlations in Neural Circuits

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2015English

Toxin Production Spontaneously Becomes Regulated by Local Cell Density in Evolving Bacterial Populations

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2019English

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