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Publications in Ecology

Ribosome Traffic on mRNAs Maps to Gene Ontology: Genome-Wide Quantification of Translation Initiation Rates and Polysome Size Regulation

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

Two Dynamic Regimes in the Human Gut Microbiome

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2017English

Origin and Evolution of Protein Fold Designs Inferred From Phylogenomic Analysis of CATH Domain Structures in Proteomes

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

An Introduction to Biomolecular Graphics

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2010English

Why Are Marine Adaptive Radiations Rare in Hawai'i?

Molecular Ecology
GeneticsEvolutionEcologySystematicsBehavior
2015English

Modelling Odor Decoding in the Antennal Lobe by Combining Sequential Firing Rate Models With Bayesian Inference

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2015English

Inference of R0 and Transmission Heterogeneity From the Size Distribution of Stuttering Chains

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

Ancestral Acquisitions, Gene Flow and Multiple Evolutionary Trajectories of the Type Three Secretion System and Effectors in Xanthomonas Plant Pathogens

Molecular Ecology
GeneticsEvolutionEcologySystematicsBehavior
2017English

Inductive Game Theory and the Dynamics of Animal Conflict

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2010English

Rapid Evolution and Selection Inferred From the Transcriptomes of Sympatric Crater Lake Cichlid Fishes

Molecular Ecology
GeneticsEvolutionEcologySystematicsBehavior
2010English

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