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Publications in Ecology

A Dual Regulation Mechanism of Histidine Kinase CheA Identified by Combining Network-Dynamics Modeling and System-Level Input-Output Data

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2018English

Escape From the Cryptic Species Trap: Lichen Evolution on Both Sides of a Cyanobacterial Acquisition Event

Molecular Ecology
GeneticsEvolutionEcologySystematicsBehavior
2016English

Improving the Modeling of Disease Data From the Government Surveillance System: A Case Study on Malaria in the Brazilian Amazon

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

Mathematical Modeling to Reveal Breakthrough Mechanisms in the HIV Antibody Mediated Prevention (AMP) Trials

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2020English

Nucleosome Free Regions in Yeast Promoters Result From Competitive Binding of Transcription Factors That Interact With Chromatin Modifiers

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

A Model of the Onset of the Senescence Associated Secretory Phenotype After DNA Damage Induced Senescence

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2017English

Comparative and Population Genomics Approaches Reveal the Basis of Adaptation to Deserts in a Small Rodent

Molecular Ecology
GeneticsEvolutionEcologySystematicsBehavior
2020English

Beyond the Hypercube: Evolutionary Accessibility of Fitness Landscapes With Realistic Mutational Networks

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2016English

A Cell-Based Computational Modeling Approach for Developing Site-Directed Molecular Probes

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2012English

A Computational Model of Liver Iron Metabolism

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

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