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Publications in Modeling

Firing-Rate Based Network Modeling of the dLGN Circuit: Effects of Cortical Feedback on Spatiotemporal Response Properties of Relay Cells

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2018English

Prediction of HIV-1 Sensitivity to Broadly Neutralizing Antibodies Shows a Trend Towards Resistance Over Time

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2017English

PLOS Computational Biology 2014 Reviewer Thank You

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2015English

VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes From Next-Generation Sequencing Data

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2014English

Approximate Bayesian Computation

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

Malaria Elimination Campaigns in the Lake Kariba Region of Zambia: A Spatial Dynamical Model

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2016English

A Dual Regulation Mechanism of Histidine Kinase CheA Identified by Combining Network-Dynamics Modeling and System-Level Input-Output Data

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2018English

Improving the Modeling of Disease Data From the Government Surveillance System: A Case Study on Malaria in the Brazilian Amazon

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

Mathematical Modeling to Reveal Breakthrough Mechanisms in the HIV Antibody Mediated Prevention (AMP) Trials

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2020English

Nucleosome Free Regions in Yeast Promoters Result From Competitive Binding of Transcription Factors That Interact With Chromatin Modifiers

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

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