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Publications in Modeling

The Rate of Beneficial Mutations Surfing on the Wave of a Range Expansion

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2012English

Similar Impact of CD8+ T Cell Responses on Early Virus Dynamics During SIV Infections of Rhesus Macaques and Sooty Mangabeys

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2010English

Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV During Childhood Infection

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2016English

A Comprehensive Ensemble Model for Comparing the Allosteric Effect of Ordered and Disordered Proteins

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2018English

Determinants of Drug-Target Interactions at the Single Cell Level

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2018English

The SH2 Domain Regulates C-Abl Kinase Activation by a Cyclin-Like Mechanism and Remodulation of the Hinge Motion

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2014English

Critical Dynamics in the Evolution of Stochastic Strategies for the Iterated Prisoner's Dilemma

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2010English

Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2012English

Rocky Mountain Conference on Bioinformatics Celebrates 10 Years

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2013English

Quantitative Protein Localization Signatures Reveal an Association Between Spatial and Functional Divergences of Proteins

PLoS Computational Biology
Molecular NeuroscienceEvolutionEcologyGeneticsBehaviorMolecular BiologySystematicsSimulationCellularComputational TheoryMathematicsModeling
2014English

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