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Publications in Signal Processing

BCC-NER: Bidirectional, Contextual Clues Named Entity Tagger for Gene/Protein Mention Recognition

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2017English

Inferring Boolean Network States From Partial Information

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2013English

Gene Regulatory Network Inference and Validation Using Relative Change Ratio Analysis and Time-Delayed Dynamic Bayesian Network

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2014English

On the Dynamical Properties of a Model of Cell Differentiation

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2013English

A Top-Down Approach to Classify Enzyme Functional Classes and Sub-Classes Using Random Forest

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2012English

A Novel Cost Function to Estimate Parameters of Oscillatory Biochemical Systems

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2012English

A Hypothesis Test for Equality of Bayesian Network Models

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2010English

Tracking of Time-Varying Genomic Regulatory Networks With a LASSO-Kalman Smoother

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2014English

Weighted Next Reaction Method and Parameter Selection for Efficient Simulation of Rare Events in Biochemical Reaction Systems

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2011English

Phase Computations and Phase Models for Discrete Molecular Oscillators

Eurasip Journal on Bioinformatics and Systems Biology
StatisticsGeneticsProbabilityMolecular BiologyBiochemistryMultidisciplinarySignal ProcessingComputer Science ApplicationsComputer ScienceMedicineComputational Mathematics
2012English

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