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Figure 2: Bayesian Consensus Trees Inferred From Analyses of Concatenated (A) Nucleotide and (B) Amino Acid Chloroplast Data (58 Protein-Coding Genes).
doi 10.7717/peerj.6899/fig-2
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Figure S4: Consensus Tree Based on PhyloBayes Analysis of the Concatenated Chloroplast Data Set, Using Amino Acid Data and the CAT-GTR Model With Gamma-Distributed Rates
Figure 2: GO (A) and Pfam (B) Annotation of Phalaenopsis Protein-Coding Genes.
Figure S5: Consensus Tree Based on PhyloBayes Analysis of the Concatenated Chloroplast Data Set, Using Nucleotide Data and the CAT-GTR Model With Gamma-Distributed Rates
Table S4: Nucleotide and Amino Acid Identities of Mitochondrial Protein Coding Genes Among Stylommatophoran and Between Arion Species
Figure 6: Maximum Likehihood (ML) Tree Inferred From 80 Concatenated Protein Coding Sequences of 37 Plastomes of Apiaceae and Araliaceae Species.
Nucleotide Base Coding and Amino Acid Replacements in Proteins
Proceedings of the National Academy of Sciences of the United States of America
Multidisciplinary
Figure 5: Mirror Images of the Phylogenies Inferred Using IQ-TREE (A: Ultra-Conserved Elements; B: Protein-Coding Genes), SVD Quartets (C: Ultra-Conserved Elements; D: Protein-Coding Genes), and ASTRAL-II (E: Ultra-Conserved Elements; F: Protein-Coding Genes).
Figure S1: Consensus Tree Based on MrBayes Analysis of the Concatenated Chloroplast Data Set (Nucleotide), in Which Serine, Arginine and Isoleucine Codons Were Ambiguously Recoded Prior to Analysis
Figure S1: Nucleotide and Amino Acid Sequences of NbHK
